Organic Structure and Bonding Introduction

Checkboxes to show additional features

Jmol.jmolCheckbox(jmolApplet0, "select all;spin on;", "select all;spin off;", " Spin  "); Jmol.jmolCheckbox(jmolApplet0, "select all;dipole calculate molecular offset 2.0;dipole ON;", "select all;dipole calculate molecular offset 2.0;dipole OFF;", " Molecular Dipole  "); Jmol.jmolCheckbox(jmolApplet0, "select all;dipole calculate bonds;dipole ON;", "select all;dipole calculate bonds;dipole OFF;", " Dipoles for All Bonds  "); Jmol.jmolCheckbox(jmolApplet0, "select all;isosurface delete resolution 6 vdw map mep;", "select all;isosurface delete resolution 6 vdw map mep;isosurface OFF;", " Electrostatic Surface  "); Jmol.jmolCheckbox(jmolApplet0, "select all;isosurface delete resolution 6 vdw map mep translucent;", "select all;isosurface delete resolution 6 vdw map mep translucent;isosurface OFF;", " Translucent Electrostatic Surface  ");

Jmol.jmolCheckbox(jmolApplet0, "select all;mo homo;mo fill nomesh translucent resolution 4;", "select all;mo homo;mo OFF;", " HOMO  "); Jmol.jmolCheckbox(jmolApplet0, "select all;mo lumo;mo fill nomesh translucent;", "select all;mo lumo;mo OFF;", " LUMO  "); Jmol.jmolCheckbox(jmolApplet0, "select all;backbone off;spacefill off;wireframe on;label %0.2P", "select all;backbone on;spacefill 20%;wireframe 0.1;label OFF;", " Partial Atomic Charges (wireframe model)");
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This section contains interactive 3D models for some of the most important organic structures covered during an undergraduate degree.

Each page contains some information about the structure with interactive buttons and checkboxes to display various features.

By clicking on the appropriate checkboxes and rotating the structures in 3D, you can explore the characteristics of the molecules and discover how and why they react as they do.

Use the acetone example below to familiarise yourself with some of the interactive features available in the electrostatic surfaces section.

Use your scroll wheel to enlarge and shrink the models, right clicking the mouse (Control-click MacOS) over the resizeable Jmol screen will give additional options and features that can be explored for the structures.

To navigate your way to the required page, simply use the side-bar. Select the type of information you are looking for and then choose from the given list.


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